rs33474224 SNP Detail

Summary

• ID
  rs33474224
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172390180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCCCGC TAATTCCAGG
  GCCTCTGTTT TGGAGGCTCG GTCTGGATTG CCTGCCTTTT TAACTTAGCC GGAAAAGCCC
  CCTTGATTCC CGCGGTTTCA ACTTCCTGGG TCTGTTAGGG TCAACTGGCC AGAAAGCTAT
  TTTGCATGCG GCTATTCTCT AAGACCATGG GGGAACGGTT GGCTTGAACA TCTATTTTAA
  Y
  TTTAGTTACT TTACTTCAGG CCTATCTGGG TCTAGGGAAA TGCTTACAGA CGAGGAGCAG
  GAAGAGAGCA AATTATTTTA GTCTGTGGAT ACGGGAGGCA CGTTCCCAAC AGGTCCTGGC
  CACTGGGCTG ATGGGTATCA AGAATTGTGT AATTGGCTTC GGAATCAATC CGAAATAGTC
  CCTGCCTCCA ATTCCACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45282762	mCV23507049	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss148318888	ENSMUSSNP954575	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss320619379	CHEV_2_172373760	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33474224					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172390180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12823	CpG island 12823	309 bp distal
Cpgi12824	CpG island 12824	427 bp proximal
Cpgi12825	CpG island 12825	999 bp proximal
Rr571697	regulatory region 571697	843 bp proximal
Tfap2c	transcription factor AP-2, gamma	Intron
Tssr21966	transcription start site region 21966	1321 bp upstream
Tssr21967	transcription start site region 21967	1376 bp upstream