rs33473041 SNP Detail

Summary

• ID
  rs33473041
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167962263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGGTTGG GAGGTTAATT
  GAAAAGGGGC CCATCTACAC AGCTAGTAAC TCTTTATTCA TGGTGGGGTG AGACCTTCAA
  AGTAGATGCT TTGGGGTGGC CCGCTTTCCA GACAGTAACC CCTCATCCTT GCTCTGTAAG
  TCAGCCAACT GGCTCCCAGG GTGAGCTTTG ATTTGTCGTT GGGACCTCGG GAGAGGAGTA
  K
  GCACATCGTT TCCATCTCAC AAGAGAACCA AGTGACCAGG AAGGGAAGAA ATGAAGGACC
  GGGGACATTC TCACACCCAT GGTCTTTGCT TGAGGGGGCA GAGAGGGCTG AAAACTCTGG
  GACCTCTGAG AAGCTCACTT GTGACATGTA TTCTGGAGAC AGGATTCGGC GCTGTGTTAG
  ATCACTTCCT GTATTCAGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45282759	mCV25281322	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T
ss148266329	ENSMUSSNP2747248	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs33473041					SNP	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167962263 () rs orientation: forward

Symbol	Name	Function Class
Gm52960	predicted gene, 52960	within coordinates
Rr570898	regulatory region 570898	865 bp distal
Tssr27826	transcription start site region 27826	1150 bp upstream