rs33465132 SNP Detail

Summary

• ID
  rs33465132
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118941525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCAAACCAT CCTTTGACGT AAAATAGTAT AAGTATAAAA
  TACAAATTTT ATCCACTTTA AAACTACTCA CAACAGGCAG TGGTGGCGCA TACCTTTAAT
  Y
  CCAGCACTTG GGAGGCAGAG GCAGGCAGAT TTCTGTTCAA GGTTAGCCTG GTCTACAGAG
  TGAGTTCCGG GACAGCCAGG GCTACACAGA GAAACCCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45282024	mCV23832896	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss147323337	ENSMUSSNP6604334	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss320473758	CHEV_2_118936780	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33465132					SNP	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118941525 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12105	CpG island 12105	1335 bp proximal
Gm57476	predicted gene, 57476	1106 bp downstream
Rad51	RAD51 recombinase	1770 bp upstream
Rr563414	regulatory region 563414	485 bp proximal
Rr563415	regulatory region 563415	676 bp proximal
Rr563416	regulatory region 563416	1273 bp proximal
Rr563417	regulatory region 563417	1776 bp proximal
Tssr19603	transcription start site region 19603	1765 bp upstream
Tssr25799	transcription start site region 25799	1704 bp downstream