rs33461627 SNP Detail

Summary

• ID
  rs33461627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172391281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGTCGGA ACAGCTGGGG
  CGAGGTGTCA GGGAACCCCA GGAGTTGAGA CACCCTGGAA TGGGGCGTCT TCAACTCTCA
  AGTGACATCC ATTTTTTAGG AGGATGAAGG ACGGTTCTTG AGGTGGGGAA ATCCCAGCTG
  TCAGCTCTGC CAGTCTAAGG TGTGCAAGGG GGCTGGCAGG CAAAGGAAGC CACGTTTGGG
  Y
  ACCTCAGCTT GGCAGGTCTG CGGTTGTCAG AGACCGCCCA CTGATGCCCC TGCGAGCCCC
  TCGCGACGCC TGGTCCTGCA ACACGCTAGG CAGGGTGCGG GGCGGAGCTA GGCAGGGACT
  GGCTGGGGGC TGCCCCGCCC GGCGCCTGGG CCTCCGCGCG GCGCCGGCCC CCGGGGAGGA
  GTTATGATAA TTTCCTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45281291	mCV23507364	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss148318923	ENSMUSSNP662793	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320619386	CHEV_2_172374861	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33461627					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172391281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12823	CpG island 12823	1410 bp distal
Cpgi12824	CpG island 12824	359 bp distal
Cpgi12825	CpG island 12825	within coordinates
Rr571697	regulatory region 571697	within coordinates
Rr571698	regulatory region 571698	931 bp proximal
Rr571699	regulatory region 571699	1247 bp proximal
Tfap2c	transcription factor AP-2, gamma	Intron
Tssr21966	transcription start site region 21966	220 bp upstream
Tssr21967	transcription start site region 21967	275 bp upstream
Tssr21968	transcription start site region 21968	1400 bp upstream
Tssr21969	transcription start site region 21969	1667 bp upstream
Tssr27948	transcription start site region 27948	1574 bp downstream