rs33452538 SNP Detail

Summary

• ID
  rs33452538
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105353398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA CAGCGACTAA ATGGTAAAAC
  K
  TGAGGTTTGA ACCCACACAC ACTGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45280404	mCV22346490	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T	G
ss147167798	ENSMUSSNP4389860	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33452538					SNP	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105353398 () rs orientation: forward

Symbol	Name	Function Class
4930527A07Rik	RIKEN cDNA 4930527A07 gene	within coordinates
Rr562247	regulatory region 562247	671 bp distal
Rr562248	regulatory region 562248	127 bp proximal
Rr562249	regulatory region 562249	156 bp proximal
Rr562250	regulatory region 562250	334 bp proximal
Rr562251	regulatory region 562251	609 bp proximal