rs33452017 SNP Detail

Summary

• ID
  rs33452017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130041579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGGTAG AGGGGGGGCA
  AGAATAGCAT CTGAAGCCTG AAAAACACAG ATGTGGCCCT AGGATTGCAT CTCTGTCCAC
  CCCTGGTATC TGCACTCAGC CTCCAGGAAG CCTGTGTTGG ATATATCTAT GCTATGCAGT
  TGTAAAACAA TATCTTTCCA CTGATTAAGC TACTAAATTA GTGGTGATGT TATTTTCAGT
  R
  GGTAGACATC TACTGAAATT CCTGTAGATG TATAAAACCT TCATTGTGCT GAAAGTTCTC
  TAATCCAGGA GCATTTGTGA AACTTCTCCA GATATTAAAC CTTCAGTTAC TTGCAGGGAG
  AAGAAACAAT CACTAGATTG TGTGCACTGC AAGAGGGCAT GTAGGGGTCT CAACACCTCT
  TACATACATT TTCAAAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49486986	NES12869558	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A	A	A	A	A		A	G	G		G
ss145472976	ENSMUSSNP3467619	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss319970937	CHEV_1_132010419	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33452017					SNP	A	A	A	A	A	G	A	A	A	A	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49486986	NES12869558	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130041579 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr417893	regulatory region 417893			within coordinates
Thsd7b	thrombospondin, type I, domain containing 7B			Intron
				Noncoding-Transcript-Variant