rs33452015 SNP Detail

Summary

• ID
  rs33452015
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130041876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgcaagagg gcatgtaggg gtctcaacac
  ctcttacata cattttcaaa gatgctctag tgtttcaccc catctttacc ccaatgaccc
  ttccccaaat acttggtact acaaatGTTG GAATTATCTG TGGGATGCTT CTGTAATATA
  W
  ATGTAGTTAT TTTCATTTTT GTCATTTGAA GACTTAACTG TGTGATATGA GGCATCTCAT
  TTGTCACAAA GATCTGGTAC CATGATCCCA GTAGTTGGAA AATATGTCTT CCCACATCCT
  GTTACTTTGA ACACTGTTTG TTCACTAGGG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49486984	NES12869416	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T		A	A	A		A
ss319970940	CHEV_1_132010716	CHEVERUD	SCREENING_POP	f	SNP									A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33452015					SNP	T	T	T	T	T	A	T	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49486984	NES12869416	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130041876 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr417893	regulatory region 417893			282 bp distal
Thsd7b	thrombospondin, type I, domain containing 7B			Intron
				Noncoding-Transcript-Variant