rs33446124 SNP Detail

Summary

• ID
  rs33446124
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120806718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT CTGGTGAGTC TGAAGAGGGT
  R
  ACTGTGTACT CACATACATA AAATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
ss45279233	mCV22579019	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss147374584	ENSMUSSNP1086445	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320480952	CHEV_2_120801973	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
rs33446124					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120806718 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12148	CpG island 12148	705 bp proximal
Gm55820	predicted gene, 55820	1414 bp downstream
Rr563749	regulatory region 563749	235 bp distal
Rr563750	regulatory region 563750	12 bp distal
Rr563751	regulatory region 563751	278 bp proximal
Rr563752	regulatory region 563752	290 bp proximal
Rr563753	regulatory region 563753	800 bp proximal
Rr563754	regulatory region 563754	806 bp proximal
Rr563755	regulatory region 563755	872 bp proximal
Rr563756	regulatory region 563756	1254 bp proximal
Tmem62	transmembrane protein 62	780 bp upstream
Tssr19722	transcription start site region 19722	844 bp upstream
Tssr19723	transcription start site region 19723	911 bp upstream
Tssr19724	transcription start site region 19724	1011 bp upstream