rs33432960 SNP Detail

Summary

• ID
  rs33432960
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146682103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTCTGC AGTTTTTCTG
  GAGGGTGGAT TTGACCGAAT CCCTGTGTCT TCTTTACTCA CTGTGGATAG TGTGAAATAC
  AGATGGAGCC AGGTCGGTGA AGACATTTCC AAGGATGGTT TTCTTAACTC CAGTGCAATG
  AGGCTGTCCT GTTTTTCTGC ACACCACAAG TACTAATAAA GAAAAAAAAA ATAAATGTTT
  K
  CTGTTAAATA CCTATTTGGG GGGTTTATTT GTAAACCATA AACTTATTTT ATTTTCATGC
  TTCCCCCTTT TTCTATTTTT ACTAGCTGGA TCTTTTAAAA TGAACAAACC AATCAATGTT
  ACATTATAAT TTAATTATAC ATATAAGAAA CAAGTGTGTA GCAAACCTTA TCTTGGTGCA
  GAGCACTGGA GCCAGCCCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45278025	mCV23999482	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G	G
ss147873706	ENSMUSSNP4130030	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		G
ss320546144	CHEV_2_146665919	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33432960					SNP	G	G	T	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146682103 () rs orientation: forward

Symbol	Name	Function Class
Gm14114	predicted gene 14114	587 bp upstream
Gm34978	predicted gene, 34978	within coordinates
Rr566735	regulatory region 566735	1388 bp distal
Rr566736	regulatory region 566736	653 bp distal
Rr566737	regulatory region 566737	192 bp distal
Tssr20612	transcription start site region 20612	1182 bp downstream