rs33418238 SNP Detail

Summary

• ID
  rs33418238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172392213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCAGTCTTCG GCCATCTCCT GGGCCCCTTG TTGAATCTGG TCTTGTCTCT CGGGGACAAG
  GCCTGGCAAG AGCGTGGCAA ACCCACCCGC AGAACTCAAC TGTGGGTTCC TACGAAGCGC
  ACGGCCCTCC TTTCCATTTT CCCCGAAGAG CGCCCTGTCT CCGGGTCTCA GACGTGGCTT
  TTTTCCCACG AAGTCTGTCC AGTGTCCACG GAAGCTTCCC TGCCAGCGAC ACCTTTGAGG
  AGTCTCCTCC AAGGAAGGCT TGTCACCTGC CCCGCTACCT CCTCGAGAAA GAAAAAAAAA
  R
  AAAGAAAGAA AGAAAAGAAA AGTCCAAACA ACTGCAACCT GGTTTTCAAG AGAAGTGGGG
  GTTGGGGACT GTGGGGTGGG GGTGAAGCCA GATGGGGCCT TGAGCGCTCG CGAGTACTCT
  AGCCTGTCGG ACAGGTTGAG CTAGAGTTTC GGAGAGTAGG AGGGAGGGAG GCGGCGAGCG
  GGAAGAGGAA GAAGATTCAG GCGGCGCGAG GCGAGCACCG GGGAACGTGG GGAGGAGAGG
  CCGGCGGCCA GGCTGCGGGA GCGCACCGCA CCCGCACGAC CTCGAGGGGC TGCCCCTGCG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45276143	mCV23507372	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33418238					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172392213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12824	CpG island 12824	1291 bp distal
Cpgi12825	CpG island 12825	within coordinates
Rr571697	regulatory region 571697	690 bp distal
Rr571698	regulatory region 571698	within coordinates
Rr571699	regulatory region 571699	315 bp proximal
Tfap2c	transcription factor AP-2, gamma	Intron
Tssr21966	transcription start site region 21966	688 bp downstream
Tssr21967	transcription start site region 21967	644 bp downstream
Tssr21968	transcription start site region 21968	468 bp upstream
Tssr21969	transcription start site region 21969	735 bp upstream
Tssr21970	transcription start site region 21970	1210 bp upstream
Tssr21971	transcription start site region 21971	1229 bp upstream
Tssr27948	transcription start site region 27948	642 bp downstream