rs33353103 SNP Detail

Summary

• ID
  rs33353103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100403287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGCCCGGG TGGGGCTCGA
  TGCCCTGCTT GTGGGTTTCC TCCTGGGTGA AGACAAGGTT TGCTTAGGCA GACTAGGCCT
  GCCCTTCTCA GCCACCTGGT TCATTTCCAC ATCTCTGTCC CCCTCTCCTC TGCTCACTGA
  GAGCAAGCAG GACTTGCAGG TCAAACTCAT GGCTGAGACA CGACTGATCT CCACCATATG
  Y
  GCGGGTCGGT TAAGTGGGAA GGGCTAGCTT CTCTAACTCA AAGATTCCTA GGTTCCATCT
  CAGCCCTGCG CAACCAGAAG CTGTGGGATG AGCACCAAAG ACAGTCTCTG TGTGGCACAT
  TCCAGGTGCT TACTATGCAA ACGAAAAGCT GAGAACTGCT AGGCCATCTG CTGGTCCCAG
  CTCACAGTGG ACTGGCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46803678	NES10735217	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33353103					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46803678	NES10735217	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100403287 () rs orientation: forward

Symbol	Name	Function Class
Gm12474	predicted gene 12474	within coordinates
Gm40106	predicted gene, 40106	within coordinates
Gm64500	predicted gene, 64500	399 bp upstream
Rr581866	regulatory region 581866	77 bp distal