rs33348151 SNP Detail

Summary

• ID
  rs33348151
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:168433677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGT GGGAGCATCC AAATGTCTTA
  R
  GGGTGGGGAC TCCAGCCAAG ACCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45267622	mCV23244187	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss148270649	ENSMUSSNP5885240	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320609878	CHEV_2_168417257	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33348151					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168433677 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12775	CpG island 12775			914 bp distal
Nfatc2	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2			Intron
				Noncoding-Transcript-Variant
Rr571026	regulatory region 571026			1577 bp distal
Rr571027	regulatory region 571027			902 bp distal
Rr571028	regulatory region 571028			1333 bp proximal
Tssr21877	transcription start site region 21877			1281 bp downstream
Tssr27851	transcription start site region 27851			1455 bp upstream
Tssr27852	transcription start site region 27852			1385 bp upstream