rs33342964 SNP Detail

Summary

• ID
  rs33342964
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84573360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTGCCCCC CGCCACACCT CGAGGCTGGA CCACACGCGC
  TCGCACGCAC ACGCACAAAC TCTCTGCCAT ACTTGCTGCA CAACTCACCC CACAGTCGAC
  M
  CTCACCCCAA CTGGAGGGTG GAGGCACGGC TCCCCGCGTC CTCGCACCCC ACCGCTACTA
  GCTAAAGCCA GCCTCACACC CCTACAAGCA AGTGGGGCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45266664	mCV23820561	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A	C
ss146834285	ENSMUSSNP5664049	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		C
ss320371978	CHEV_2_84583173	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33342964					SNP	A	A	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84573360 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11865	CpG island 11865	within coordinates
Gm19426	predicted gene, 19426	within coordinates
Gm57423	predicted gene, 57423	873 bp upstream
Mir130a	microRNA 130a	1838 bp upstream
Rr373462	regulatory region 373462	within coordinates
Rr560320	regulatory region 560320	1728 bp distal
Rr560322	regulatory region 560322	within coordinates
Rr560323	regulatory region 560323	347 bp distal
Rr560324	regulatory region 560324	182 bp proximal
Rr560325	regulatory region 560325	733 bp proximal
Rr560326	regulatory region 560326	884 bp proximal
Rr560327	regulatory region 560327	1390 bp proximal
Tssr18679	transcription start site region 18679	77 bp downstream
Tssr18680	transcription start site region 18680	4 bp downstream
Tssr18681	transcription start site region 18681	864 bp upstream
Tssr25039	transcription start site region 25039	676 bp downstream
Tssr25040	transcription start site region 25040	733 bp downstream
Tssr25041	transcription start site region 25041	751 bp downstream