rs33338827 SNP Detail

Summary

• ID
  rs33338827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127099344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TCTTCACCAA ATCTTCCCCA GGAGACACTC TGCCTTTAGG TTTGTCCATG
  Y
  GTCCCTGCTC TGCAGAGCCG GGACTCTGAT TTCATATAAT GTACTCTTTC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45266703	mCV22836635	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss147524684	ENSMUSSNP4457168	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33338827					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127099344 () rs orientation: forward

Symbol	Name	Function Class
Rr564482	regulatory region 564482	1974 bp proximal
Tmem127	transmembrane protein 127	mRNA-UTR
Tssr20001	transcription start site region 20001	1185 bp upstream