rs33307074 SNP Detail

Summary

• ID
  rs33307074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156813485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATATTCAC ACTCAAATGT AATCACCCAC CTGAACAAAT
  CAGGAATGTC GTACATTACT CATAGAACAT AAGCGAAGTG ATAAAATATG ACTTTTTAGA
  R
  TTCCCTTACA TGGACATTTT AGTTTCTGTG ATTTCTATCA CCAAGGGAGA AAACTAGTAT
  ATTGTTAGGG CACACACAGA CCTCTGAAGG TCCACGTAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45262152	mCV22553894	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss148088638	ENSMUSSNP4840011	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320583272	CHEV_2_156797301	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33307074					SNP	G	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156813485 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndrg3	N-myc downstream regulated gene 3			Intron
				Noncoding-Transcript-Variant
Rr568395	regulatory region 568395			795 bp distal
Rr568396	regulatory region 568396			1390 bp proximal
Tssr27078	transcription start site region 27078			1272 bp upstream
Tssr27079	transcription start site region 27079			1147 bp upstream
Tssr27080	transcription start site region 27080			1071 bp upstream
Tssr27081	transcription start site region 27081			1045 bp upstream
Tssr27082	transcription start site region 27082			992 bp upstream