rs33271078 SNP Detail

Summary

• ID
  rs33271078
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:3444532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACAGTTG GATGTCTTCC
  TTGTTGGGTC AGGATTTAGA CTTGTCCTGT TTGTCACTCC TGTTGGTCCC CAAGCTCATC
  TGGAGGGGAG GGACAGTGGC TTCTTTAAAA AATAATAATA ATCTTTGTAA TATATTGTGT
  TTTATATCAG TTGTTTTATT TTTATTATGT TGAGCCTTGA ACCTAGTTCC TTGCACATAC
  W
  AGGAAAACTC TCCACCAAGC CACTCCCCTA TCCCTTATTT CAATTATTTA TTATTATTTT
  CTGGAGGTCA GATGGCAACA TTGTGATTCT GTCTTTCCAC CTTTGGCAAA CGGGCACAGC
  TCGAGTCTTA ACCCCGTCCC AGGCTGGCCT TGAATCCCCC TCCCCCCTCC ACTTCTCAAG
  GGCTGGGCCC CTTTTTCAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46255789	mCV22562700	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss148543599	ENSMUSSNP4277164	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33271078					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3444532 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgef18	Rho/Rac guanine nucleotide exchange factor 18			Intron
				Noncoding-Transcript-Variant
Cpgi20017	CpG island 20017			1180 bp distal
Gm64114	predicted gene, 64114			707 bp downstream
Rr381632	regulatory region 381632			within coordinates
Rr658901	regulatory region 658901			1484 bp distal
Rr658902	regulatory region 658902			1572 bp distal
Rr658903	regulatory region 658903			896 bp distal
Rr658904	regulatory region 658904			90 bp proximal
Tssr76040	transcription start site region 76040			1517 bp downstream
Tssr76041	transcription start site region 76041			1479 bp downstream