rs33265499 SNP Detail

Summary

• ID
  rs33265499
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112356549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGAGCCTT CCCAAGAAGA ATCCTCTTAC ACAAAGACCA
  AAGTCAAGGA AGCTGGGTCT GTTTTCTGGT CCTCAAGAGT GCATCTGTTC TCCCCACCCC
  S
  ACTCCCGCCA CAACCCCAGG CAGGTGAGTT TGCTCCTAGG TTGTGTCCTT TACACAGGAG
  GGTCTGTCCA TCTGCTGACA GGAACCAGTA GGGACTAGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45757460	mCV23097001	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	G
ss149079272	ENSMUSSNP4165046	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		G
ss321645070	CHEV_5_112637703	CHEVERUD	SCREENING_POP	f	SNP						C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33265499					SNP	C	C	C	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112356549 () rs orientation: forward

Symbol	Name	Function Class
1700028D13Rik	RIKEN cDNA 1700028D13 gene	within coordinates
Gm72184	predicted gene, 72184	1957 bp upstream
Rr617281	regulatory region 617281	1876 bp distal
Rr617282	regulatory region 617282	1525 bp distal
Rr617283	regulatory region 617283	1341 bp proximal
Rr617284	regulatory region 617284	1608 bp proximal
Tssr47952	transcription start site region 47952	1902 bp downstream
Tssr47953	transcription start site region 47953	1890 bp downstream