rs33236404 SNP Detail

Summary

• ID
  rs33236404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:156269783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTTTGT CTAGGGGGGA
  AAAGTTAGGT TCCTTTGAGA AGGAAGGTAC TTTGCCCATT CATACCCATT TCTCAAGATT
  GCAGTTAAAA TCAGTAAGGC TGGAAAGTCA CTGAGCAAGG CAGGGCAGAC TCTGCCAACG
  GCACAGCAAC CTTCCTCTGG GTAAGTCAAG ATCTTGGCCT GCTTCTAATC CCAGCACTGA
  Y
  GCATCCTTGC CAGATCTCAT CCCTGCAGCT CGGGATGAAG CTCTATACCG TTAGGAAGCT
  AGGAATAGGT TGTCACAGGC CAGGGATCTG GTATGACCTA TTCAATACCC ACAAGCAAAA
  GCCGCCCTTC CGCAGCAACC CCAGGCTTTG ATTTGACGCC GCCTTCCCGA AACCCTTGGT
  AACTGAGATG AGGGGCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46789422	NES10982943	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33236404					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789422	NES10982943	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156269783 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agrn	agrin			Intron
				Noncoding-Transcript-Variant
Gm46878	predicted gene, 46878			714 bp upstream
Rr606687	regulatory region 606687			565 bp proximal
Rr606688	regulatory region 606688			634 bp proximal
Rr606689	regulatory region 606689			867 bp proximal
Rr606690	regulatory region 606690			1003 bp proximal
Tssr40793	transcription start site region 40793			853 bp upstream
Tssr45009	transcription start site region 45009			746 bp downstream
Tssr45010	transcription start site region 45010			767 bp downstream
Tssr45011	transcription start site region 45011			889 bp downstream