rs33234880 SNP Detail

Summary

• ID
  rs33234880
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5286884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTGACAAA ACTGACGGAG CAAGCTCAGA CTTCTTTCTT
  CCTTCCTTCC TTCCTTCCTT TCTTCCTTTC TTCCTTTCTT CCTTTCTTTC GCTTTTTGCT
  W
  TTTTCTCTTT TCTAAATGAA GAATAAAAAG AATAATGTGT ATAACATTTG TTGAAAAGGA
  TGGGTTTTAA TAACGCATAA AGGAAATTTG GGGATTATTT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	NZW/LacJ
ss46789234	NES10634016	PERLEGEN	MM_PANEL2	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	NZW/LacJ
rs33234880					SNP	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789234	NES10634016	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5286884 () rs orientation: forward

Symbol	Name	Function Class
2700069I18Rik	RIKEN cDNA 2700069I18 gene	1001 bp upstream
Rr406719	regulatory region 406719	1710 bp proximal
Rr573173	regulatory region 573173	907 bp distal
Rr573174	regulatory region 573174	505 bp distal
Rr573175	regulatory region 573175	55 bp distal
Tssr28274	transcription start site region 28274	755 bp downstream
Tssr28275	transcription start site region 28275	621 bp downstream
Tssr28276	transcription start site region 28276	579 bp downstream
Tssr32523	transcription start site region 32523	1029 bp upstream
Zfhx4	zinc finger homeodomain 4	Intron