rs33234879 SNP Detail

Summary

• ID
  rs33234879
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5286637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCTTTC TTTCTTTCTT
  TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTCTTTT TATAATTTTC TTCTCCTGGA
  TTTTCAGTGG CGTGATCCCT ATACACGTGG AGTGGTTAGA CCTCATATGT AGTATTATAT
  TTTTAGTTGG GTGAATGTTT GGAAGAGTCA GGGAGAGGCT GAGGCTGCCG CTGCCTTTTC
  S
  GTTGGTGCTT AGATTAAGGC TGAGACTTGG CTGCGATTGG GACGCGACAG TGACATGGGC
  ATCGATCGCT TCCATTGAGA GCAAAGCAAA AACACAGCCC GGGTATGTAA CACTTGCTGC
  CATCCACACT TGCTTTACCT TGTGTTTACT GACAAAACTG ACGGAGCAAG CTCAGACTTC
  TTTCTTCCTT CCTTCCTTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46789231	NES10634015	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33234879					SNP	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789231	NES10634015	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5286637 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2700069I18Rik	RIKEN cDNA 2700069I18 gene			754 bp upstream
Rr406719	regulatory region 406719			1957 bp proximal
Rr573173	regulatory region 573173			660 bp distal
Rr573174	regulatory region 573174			258 bp distal
Rr573175	regulatory region 573175			within coordinates
Tssr28274	transcription start site region 28274			508 bp downstream
Tssr28275	transcription start site region 28275			374 bp downstream
Tssr28276	transcription start site region 28276			332 bp downstream
Tssr32523	transcription start site region 32523			782 bp upstream
Zfhx4	zinc finger homeodomain 4			Intron
				mRNA-UTR