rs33199208 SNP Detail

Summary

• ID
  rs33199208
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155871734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTCTGTTT TTTAAAGGAA CGAATATTCT CACTACACAT
  CCCACTATGA ATGTTTATGT CAGTCCAGAT CTTTGCTTCT TGTTGGCTAG CCTATGAAAC
  R
  TACTTTTAAG GAGCTGGGAT TAAAGGCATG CGCCACCATG CCCGGCTCGA CATTTTATTT
  TTGATTATGT GTGTATGTGT ATCTATATGT GGGTATGTGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	DBA/2J	MOLF/EiJ	NZW/LacJ
ss46783983	NES10996622	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	DBA/2J	MOLF/EiJ	NZW/LacJ
rs33199208					SNP	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46783983	NES10996622	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155871734 () rs orientation: forward

Symbol	Name	Function Class
Rr606571	regulatory region 606571	1099 bp distal
Rr606572	regulatory region 606572	1144 bp proximal
Rr606573	regulatory region 606573	1637 bp proximal
Tmem278	transmembrane protein 278	1403 bp upstream
Tssr44978	transcription start site region 44978	1397 bp upstream
Tssr44979	transcription start site region 44979	1357 bp upstream