rs33197603 SNP Detail

Summary

• ID
  rs33197603
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174275966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGATGAGT CTCAGTGGGG
  GGCCGGACAC CAGCACTCAG TGCTCACGTA CTACCACCCC CCCACCCCCA CCCCCACTAA
  GAGATAGATA GGATCATCAC AACATCCACC AGGGGATGGC TGACCTACTT CCTGAAAAGC
  CATCTTGTTC TTCACTCTTA AGCTCTACAC GCCCGCCCGC CCGCCCGTAT AAAGCAACCA
  W
  GCACCCCAGG CCATTTCCCC TATAGCCCCA CCCACTCCTC CCCTAAAGCA AAGCTTACCT
  TTGTTTTCTC TCCCTCCTTC ACATGGTCTT CAGCTCTGAG CCATCCCTCA CACGCCCTAG
  TCACACTCCA CCACCTCAGA GGGCTCGCCA CGGAACAACG CACAAGCAGA CCTTGTCTCG
  CCACCATTTT AGACCTGTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45249202	mCV23192359	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss148343421	ENSMUSSNP2855760	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss320627806	CHEV_2_174259674	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33197603					SNP	T	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174275966 () rs orientation: forward

Symbol	Name	Function Class
Ctsz	cathepsin Z	Intron
Rr572121	regulatory region 572121	340 bp proximal
Rr572122	regulatory region 572122	1946 bp proximal
Tssr28023	transcription start site region 28023	1732 bp upstream
Tssr28024	transcription start site region 28024	601 bp upstream
Tssr28025	transcription start site region 28025	521 bp upstream