rs33174698 SNP Detail

Summary

• ID
  rs33174698
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155552728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACCTCCT ATCCTCCCTT
  AGCCAGCCTG GTTGTGCTGA CCACCTGCTG CAATTTGATC ACTAGTGTTC TAATAGCCCC
  TAGTAGTGGG GGGCAGAGCA GCCGGCCCAG CTCTTAGCCT GGAGGGAGGA CTATTAAGGA
  GATTCCCCCG AGAAGCAGCA GCCACTTCCG GAGAAGAAGC AGGCATTCCA GGTTGAGCAA
  R
  GAGTGGTCAA CGAATGCGAT CTTTAAAGCC AAATGTTTTT TTTTGGAAAG TGGTCTGTCT
  GCAGTGGTTT AGTAGTCCAG AGCCAGGGGC CAAATGGGCC ATTCCCCGGA GGTATCCCTA
  CAGAGGATCC ATAGCAAAGG TCCTTGAATG ATGACCTAGA AGGCCCAGCA CGGGCTGGAG
  AGATGGCTCA GTGGGTAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46780684	NES10992849	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33174698					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46780684	NES10992849	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155552728 () rs orientation: forward

Symbol	Name	Function Class
C030017K20Rik	RIKEN cDNA C030017K20 gene	1866 bp downstream
Cfap74	cilia and flagella associated protein 74	1448 bp downstream
Cpgi15469	CpG island 15469	767 bp proximal
Gm69352	predicted gene, 69352	within coordinates
Rr606482	regulatory region 606482	693 bp proximal
Rr606483	regulatory region 606483	1358 bp proximal
Tmem52	transmembrane protein 52	843 bp upstream
Tssr40642	transcription start site region 40642	1667 bp downstream
Tssr40643	transcription start site region 40643	852 bp upstream