rs33166900 SNP Detail

Summary

• ID
  rs33166900
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155503111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGCCTAG AATGGCCTCA
  GACTTCCTAG ACCTGACCTG GAATTCTGGC TTCTGCTTTT ATCCTTTCTG CGCTTGAAGC
  AATAGGCCTG AGCCGCCACA CATAGCTGAC CATGGTTTGG CTCTTTGTTG TTTCTGTTTT
  GTTTTGACTG TTCCCTCGAT TTCTAGAAAG AGTCCAGTTG GAGGATCTGG AGTTTGAGGT
  W
  GAACGGCCTT CTGAGGGACT AGAGGATGAA GGCAGCCACA GGTAACTCAC CAAGATGCAT
  GAAGATTCCT CCTTTGAAGG AAGGAAGGCT GCATGTCTAG TGGGCTGTGG AGCTGCGGGG
  TGGAGAGCAG TCGAGGGTCG AGCTGAGCGT TAGGGTTTGT GTGTGGAGCA AGTGCTATCT
  TTTTATGTCA AGTTCAGCGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46779991	NES10995075	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33166900					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779991	NES10995075	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155503111 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
5830444B04Rik	RIKEN cDNA 5830444B04 gene			within coordinates
Cfap74	cilia and flagella associated protein 74			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr606475	regulatory region 606475			1845 bp distal
Rr606476	regulatory region 606476			1527 bp distal