rs33166894 SNP Detail

Summary

• ID
  rs33166894
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155502945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTGGTAT CACCATGGAA
  ACTGTCTAAG GGTGACTGAG GATGCCCAAA GTTCCCTGGA TACGTGTGTG TGTTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTTTTA AGTATTTTTA TCTTTTGACA ATTTTGTTTT
  GTTTTGTATT TTGAGGCAGG GCCTCACATA GCCTAGAATG GCCTCAGACT TCCTAGACCT
  K
  ACCTGGAATT CTGGCTTCTG CTTTTATCCT TTCTGCGCTT GAAGCAATAG GCCTGAGCCG
  CCACACATAG CTGACCATGG TTTGGCTCTT TGTTGTTTCT GTTTTGTTTT GACTGTTCCC
  TCGATTTCTA GAAAGAGTCC AGTTGGAGGA TCTGGAGTTT GAGGTTGAAC GGCCTTCTGA
  GGGACTAGAG GATGAAGGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46779985	NES10995071	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33166894					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779985	NES10995071	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155502945 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
5830444B04Rik	RIKEN cDNA 5830444B04 gene			within coordinates
Cfap74	cilia and flagella associated protein 74			Intron
				Noncoding-Transcript-Variant
Rr606475	regulatory region 606475			1679 bp distal
Rr606476	regulatory region 606476			1361 bp distal