rs33166111 SNP Detail

Summary

• ID
  rs33166111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155502755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGCATTG TATATGGCCT
  GTGGCCACCA CAAACTCAAC CAAACAGTGG AAAGAAAAAG GAAAGCGGGG GTTGGGGATT
  TAGCTCAGTG GTAGAGCGCT TGCCTGGCAA GCGCAAGGCC CTGGGTTCGG GCCTCAGCTC
  TAGGGAAAAA AAAAGAAAAA AAGAAAAAGA AAAAGAAAAA GGAAAGGGAA ATGTTGGTAT
  Y
  ACCATGGAAA CTGTCTAAGG GTGACTGAGG ATGCCCAAAG TTCCCTGGAT ACGTGTGTGT
  GTTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTTTTAA GTATTTTTAT CTTTTGACAA
  TTTTGTTTTG TTTTGTATTT TGAGGCAGGG CCTCACATAG CCTAGAATGG CCTCAGACTT
  CCTAGACCTG ACCTGGAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46779982	NES10995070	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33166111					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779982	NES10995070	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155502755 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
5830444B04Rik	RIKEN cDNA 5830444B04 gene			within coordinates
Cfap74	cilia and flagella associated protein 74			Intron
				Noncoding-Transcript-Variant
Rr606475	regulatory region 606475			1489 bp distal
Rr606476	regulatory region 606476			1171 bp distal