rs33165269 SNP Detail

Summary

• ID
  rs33165269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155502178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCTGAGG CCAGCCTGAC
  CTCCATAGCA AGCTCTAGGG AAGACAAGGC TACACAGTGA GACCATCTGT CTTTACTTGA
  GAGGCCAAAT CAAGGGGAAC TGATATGAGT TCAAGACCAA GCTAGGATAC AAAGTGAAAC
  CCTGTCTCAA ACAAAACCAA GTCATAAATA ACATAAAAAC TGTGTAGTCA GGCTTGGTCC
  R
  GCTTGGTGGA AACATCTTTG AAACTCCAGC TGAGGCAGGA GGGCAGGGGC AAGGGCAAGG
  CCAGCAGCAT AAGCTACAAA TATCTAAGAG AAAAAAGGAA AGTTGAAACA CTTCTTTTTT
  TGTTTGCTTT TTTTTGTTTG GTTGGTTGGT TTTTTGTTTT TTGTTTTTTT TTTTCAAGAC
  AGGGTTTCTC TGTATAGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46779970	NES10995183	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33165269					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779970	NES10995183	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155502178 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
5830444B04Rik	RIKEN cDNA 5830444B04 gene			within coordinates
Cfap74	cilia and flagella associated protein 74			Intron
				Noncoding-Transcript-Variant
Rr606475	regulatory region 606475			912 bp distal
Rr606476	regulatory region 606476			594 bp distal