rs33164427 SNP Detail

Summary

• ID
  rs33164427
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155500332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGCTAAT TTCTGTCTCC
  CAGTATGGAA GAACCTACTG TCCAGTTTTC TGATGAGGAC CTTGTGGACA ACTTCCCTCC
  CATGGATGAC GGTAATGGAG GTCTTTTCCC AGCGTGGACT GTTTCAGAAC AGGGAAGACA
  GTGTTTTCTG GCAGCCCTTT ATTCCAGGGA AAGTGCATCT TCTAAATTCA TTTATTTCTC
  K
  AACAGGGAAT TGTGCTTTTG TTTTTAGTTG AAAAATAATA GTGACTGAGA CTTTGAATGT
  GGCATTCTGT ATTTTTCTAG TTTCCATTAA TAAACTGATG CCAGTTTAAA TCTCAATCCT
  TTGAATGTGA CCTGGAATGT TTTAGAATTT CTTCTAAATT TTTCTGATGA TCCAAACTTT
  TATGAGATGT CCTTGATTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46779958	NES10995305	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33164427					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779958	NES10995305	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155500332 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
5830444B04Rik	RIKEN cDNA 5830444B04 gene			within coordinates
Cfap74	cilia and flagella associated protein 74			Intron
				Noncoding-Transcript-Variant
Rr606475	regulatory region 606475			195 bp proximal
Rr606476	regulatory region 606476			1231 bp proximal
Tssr40639	transcription start site region 40639			924 bp downstream
Tssr40640	transcription start site region 40640			889 bp downstream
Tssr40641	transcription start site region 40641			857 bp downstream
Tssr44947	transcription start site region 44947			1097 bp upstream
Tssr44948	transcription start site region 44948			1071 bp upstream
Tssr44949	transcription start site region 44949			991 bp upstream