rs33164424 SNP Detail

Summary

• ID
  rs33164424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155500278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCTGATGA GGACCTTGTG GACAACTTCC CTCCCATGGA
  TGACGGTAAT GGAGGTCTTT TCCCAGCGTG GACTGTTTCA GAACAGGGAA GACAGTGTTT
  Y
  CTGGCAGCCC TTTATTCCAG GGAAAGTGCA TCTTCTAAAT TCATTTATTT CTCGAACAGG
  GAATTGTGCT TTTGTTTTTA GTTGAAAAAT AATAGTGACT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46779955	NES10995303	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33164424					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779955	NES10995303	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155500278 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
5830444B04Rik	RIKEN cDNA 5830444B04 gene			within coordinates
Cfap74	cilia and flagella associated protein 74			Intron
				Noncoding-Transcript-Variant
Rr606475	regulatory region 606475			249 bp proximal
Rr606476	regulatory region 606476			1285 bp proximal
Tssr40639	transcription start site region 40639			870 bp downstream
Tssr40640	transcription start site region 40640			835 bp downstream
Tssr40641	transcription start site region 40641			803 bp downstream
Tssr44947	transcription start site region 44947			1043 bp upstream
Tssr44948	transcription start site region 44948			1017 bp upstream
Tssr44949	transcription start site region 44949			937 bp upstream