rs33163639 SNP Detail

Summary

• ID
  rs33163639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155500019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATCCATTT TCTTAATGGA TATTAATATA CAATCATTAC
  TTTTTTGTAC TTTTGAGTCT TATTGTGTAG ACGATGGTCT CTCAAATGTC TCTCTTCCTC
  R
  CCTTCCTGAT TACTGGGACC CTGGGTACAT GGCTCTGCAC CCTTAAGTTA TTAGAAATGT
  TAACATTTTT TAAACTTCAA TCTTGTTGAT ATATATTTTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46779949	NES10995298	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33163639					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46779949	NES10995298	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155500019 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
5830444B04Rik	RIKEN cDNA 5830444B04 gene			within coordinates
Cfap74	cilia and flagella associated protein 74			Intron
				Noncoding-Transcript-Variant
Rr606475	regulatory region 606475			508 bp proximal
Rr606476	regulatory region 606476			1544 bp proximal
Tssr40639	transcription start site region 40639			611 bp downstream
Tssr40640	transcription start site region 40640			576 bp downstream
Tssr40641	transcription start site region 40641			544 bp downstream
Tssr44947	transcription start site region 44947			784 bp upstream
Tssr44948	transcription start site region 44948			758 bp upstream
Tssr44949	transcription start site region 44949			678 bp upstream