rs33162463 SNP Detail

Summary

• ID
  rs33162463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:47035436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCAGTCT TCAAGAGAAG
  CGCAGCTGGC CTGAGGGCAC AGCAAGGACT CTGCAACCTT TGCCGCCTTC CTCCCGTACA
  GAGTTGTGTC TCAGCTCCTA GCCGAGCTGG ATGGGCTCCA CAGCACCCAG GATGTGTTTG
  TGATCGGAGC CACCAACAGA CCAGACCTCC TGGACCCTGC CCTTCTGCGG CCTGGCAGGT
  R
  GGGACCCTGG ACCTCTCCCC TCCACAAGGC TCCTTTGCGC CTTAACCTCT ATCCTGGGCA
  TCCTTCACCT CTCATGGTTG GCAGCCCTAA CACTTCCTGT CTCTGTCTCT CTGAAGATTT
  GACAAGCTGG TGTTTGTAGG GGCGAGTGAG GACCGGGCCT CCCAGCTGCG TGTGCTGAGC
  GCCATCACAC GGAAGTATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39502530	mCV25217951	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss145701245	ENSMUSSNP6814195	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33162463					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47035436 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gnmt	glycine N-methyltransferase			1154 bp downstream
Pex6	peroxisomal biogenesis factor 6			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Rr527806	regulatory region 527806			1019 bp proximal
Rr527807	regulatory region 527807			1944 bp proximal
Tssr148377	transcription start site region 148377			1804 bp downstream
Tssr148378	transcription start site region 148378			1817 bp downstream
Tssr148379	transcription start site region 148379			1834 bp downstream