rs33160970 SNP Detail

Summary

• ID
  rs33160970
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115897570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGCTCCTA AAGTTTTCCC AAAAGGAAAA GGAAGCGAGT
  AGGGTTAAAA AGGTAAATAC CCGACTAGGT TTTGGTAGAA ACTAGTTCTG GCCGGGGTCC
  Y
  GCCCAATCCC TGGCCGGAGT TCCAGCTGGC TTTACCTCTG CTCTGCTGTT TCCCCGCGGC
  TGCGCGTCAA TCACCGAGAG ACGAGAGCTG GGGGCGGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45244155	mCV22793499	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147270057	ENSMUSSNP2234381	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33160970					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115897570 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2700033N17Rik	RIKEN cDNA 2700033N17 gene			within coordinates
G630016G05Rik	RIKEN cDNA G630016G05 gene			136 bp upstream
Meis2	Meis homeobox 2			Intron
				mRNA-UTR
Rr562986	regulatory region 562986			1552 bp distal
Rr562987	regulatory region 562987			944 bp distal
Rr562988	regulatory region 562988			within coordinates
Rr562989	regulatory region 562989			389 bp proximal
Rr562990	regulatory region 562990			890 bp proximal
Rr562991	regulatory region 562991			1016 bp proximal
Tssr19467	transcription start site region 19467			124 bp upstream
Tssr19468	transcription start site region 19468			844 bp upstream
Tssr25724	transcription start site region 25724			1956 bp upstream
Tssr25725	transcription start site region 25725			1851 bp upstream
Tssr25726	transcription start site region 25726			1433 bp upstream
Tssr25727	transcription start site region 25727			1400 bp upstream
Tssr25728	transcription start site region 25728			1384 bp upstream
Tssr25729	transcription start site region 25729			1354 bp upstream
Tssr25730	transcription start site region 25730			1293 bp upstream
Tssr25731	transcription start site region 25731			1236 bp upstream
Tssr25732	transcription start site region 25732			1124 bp upstream
Tssr25733	transcription start site region 25733			1026 bp upstream
Tssr25734	transcription start site region 25734			36 bp downstream
Tssr25735	transcription start site region 25735			66 bp downstream
Tssr25736	transcription start site region 25736			266 bp downstream
Tssr25737	transcription start site region 25737			302 bp downstream