rs33152548 SNP Detail

Summary

• ID
  rs33152548
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95859935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAGGTCTT GGACTGCAGG CCATCCTAGG CCACATAGCC
  AGTCCTATCC TCAAACAGAC AAGGATGGAG CAGAGTGTAG CACAAAGCTA GTGGTTTGGT
  S
  CCTGCTATTT GAAGAAGGAG AGGTGGTAAA ACACTTGGAT TTTTGCCCAC TTTGTGACAT
  TGTATCTCTG TATCCTTGGC TGTTCTGGAA TTCAATCTGT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46778210	NES10734251	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33152548					SNP	C	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778210	NES10734251	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95859935 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	1133 bp distal
Gm56819	predicted gene, 56819	1332 bp upstream
Gm65572	predicted gene, 65572	937 bp downstream
Rr375411	regulatory region 375411	735 bp downstream
Rr581095	regulatory region 581095	1343 bp distal
Rr581096	regulatory region 581096	1285 bp distal
Rr581097	regulatory region 581097	639 bp distal
Rr581098	regulatory region 581098	475 bp proximal
Rr581099	regulatory region 581099	1506 bp proximal
Tssr30663	transcription start site region 30663	1537 bp downstream
Tssr30664	transcription start site region 30664	1256 bp downstream
Tssr34570	transcription start site region 34570	1587 bp upstream