rs33150761 SNP Detail

Summary

• ID
  rs33150761
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95858762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAACCCCC GCCCCATCCC
  TTGTCAGAGC TCCCGTGCAT GCGCAGTCGC GCCGGAAGCA CGGCTCTGGA GTTTCCGCAT
  CACGGACCTC AGGGATCCTC TACGCTGTTC ATTGTCCTTC GGGTCTCGCA ACGTTTGCCT
  AATGATTCCC AATTTCAGTG TTGCATCATT CTAAAGCCTG ATGTTGAAGA CTATCGCCCA
  R
  CCCTGGTTAG CCAGTAATCG GAAACAGCAA CGTTATGTGT CTTCTAAAGA AATGAGGGCT
  AGTTTTGTTT TGTTGTTTTT GGTTTTTTTT CGAGACAGGG TTTCTCTGTG TAGCCCTGGC
  TGTCCTGAAA CTCACTCTGT AGACCAGGCT GGCCTCGAAC TCAGAAATCC GCCTGCCTCT
  GCCTCCCAAG TGCTAGGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46778189	NES10734341	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33150761					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778189	NES10734341	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95858762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	within coordinates
Gm56819	predicted gene, 56819	159 bp upstream
Gm65572	predicted gene, 65572	within coordinates
Rr375411	regulatory region 375411	within coordinates
Rr581095	regulatory region 581095	170 bp distal
Rr581096	regulatory region 581096	112 bp distal
Rr581097	regulatory region 581097	within coordinates
Rr581098	regulatory region 581098	1648 bp proximal
Tssr30663	transcription start site region 30663	364 bp downstream
Tssr30664	transcription start site region 30664	83 bp downstream
Tssr34570	transcription start site region 34570	414 bp upstream