CCCAACCCCC GCCCCATCCC TTGTCAGAGC TCCCGTGCAT GCGCAGTCGC GCCGGAAGCA CGGCTCTGGA GTTTCCGCAT CACGGACCTC AGGGATCCTC TACGCTGTTC ATTGTCCTTC GGGTCTCGCA ACGTTTGCCT AATGATTCCC AATTTCAGTG TTGCATCATT CTAAAGCCTG ATGTTGAAGA CTATCGCCCA R CCCTGGTTAG CCAGTAATCG GAAACAGCAA CGTTATGTGT CTTCTAAAGA AATGAGGGCT AGTTTTGTTT TGTTGTTTTT GGTTTTTTTT CGAGACAGGG TTTCTCTGTG TAGCCCTGGC TGTCCTGAAA CTCACTCTGT AGACCAGGCT GGCCTCGAAC TCAGAAATCC GCCTGCCTCT GCCTCCCAAG TGCTAGGATT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46778189 | NES10734341 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | A | A | A | A | A | A | G | A |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
||||
rs33150761 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46778189 | NES10734341 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:95858762 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13530 | CpG island 13530 | within coordinates | ||||||
Gm56819 | predicted gene, 56819 | 159 bp upstream | ||||||
Gm65572 | predicted gene, 65572 | within coordinates | ||||||
Rr375411 | regulatory region 375411 | within coordinates | ||||||
Rr581095 | regulatory region 581095 | 170 bp distal | ||||||
Rr581096 | regulatory region 581096 | 112 bp distal | ||||||
Rr581097 | regulatory region 581097 | within coordinates | ||||||
Rr581098 | regulatory region 581098 | 1648 bp proximal | ||||||
Tssr30663 | transcription start site region 30663 | 364 bp downstream | ||||||
Tssr30664 | transcription start site region 30664 | 83 bp downstream | ||||||
Tssr34570 | transcription start site region 34570 | 414 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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