rs33150757 SNP Detail

Summary

• ID
  rs33150757
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95858639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGAA GCACGGCTCT GGAGTTTCCG
  Y
  ATCACGGACC TCAGGGATCC TCTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46778183	NES10734337	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	C	T	C	T		C	T	C		T
ss135513194	ENSMUSSNP2629823	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320841251	CHEV_3_95755250	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33150757					SNP	T	T	C	C	C	T	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778183	NES10734337	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95858639 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	within coordinates
Gm56819	predicted gene, 56819	36 bp upstream
Gm65572	predicted gene, 65572	1 bp upstream
Rr375411	regulatory region 375411	within coordinates
Rr581095	regulatory region 581095	47 bp distal
Rr581096	regulatory region 581096	within coordinates
Rr581097	regulatory region 581097	12 bp proximal
Rr581098	regulatory region 581098	1771 bp proximal
Tssr30663	transcription start site region 30663	241 bp downstream
Tssr30664	transcription start site region 30664	within coordinates
Tssr34570	transcription start site region 34570	291 bp upstream