CGGAA GCACGGCTCT GGAGTTTCCG Y ATCACGGACC TCAGGGATCC TCTAC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46778183 | NES10734337 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | C | C | C | T | C | T | C | T | C | T | ||
ss135513194 | ENSMUSSNP2629823 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | |||||||||||||
ss320841251 | CHEV_3_95755250 | CHEVERUD | SCREENING_POP | f | SNP | C | T | ||||||||||||
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs33150757 | SNP | T | T | C | C | C | T | C | T | C | C | T | C | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46778183 | NES10734337 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr3:95858639 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13530 | CpG island 13530 | within coordinates | ||||||
Gm56819 | predicted gene, 56819 | 36 bp upstream | ||||||
Gm65572 | predicted gene, 65572 | 1 bp upstream | ||||||
Rr375411 | regulatory region 375411 | within coordinates | ||||||
Rr581095 | regulatory region 581095 | 47 bp distal | ||||||
Rr581096 | regulatory region 581096 | within coordinates | ||||||
Rr581097 | regulatory region 581097 | 12 bp proximal | ||||||
Rr581098 | regulatory region 581098 | 1771 bp proximal | ||||||
Tssr30663 | transcription start site region 30663 | 241 bp downstream | ||||||
Tssr30664 | transcription start site region 30664 | within coordinates | ||||||
Tssr34570 | transcription start site region 34570 | 291 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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