rs33150754 SNP Detail

Summary

• ID
  rs33150754
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95858472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTAATTG CTGCTACTAC
  AGCAGAGCGC CCTGCTGGGG TCCGCCAAGA ACAGGACTTA GGACAGAACT GCAAATCGAG
  CACTCGTTCC GGAGCTAGCG AAGGCGGATG TGACGTCAGA TCGACTACGT CGGATGCACC
  TGCCAGGCCT GGGCTCCTGG GAGTGAGACA CGGTTGCCCC AGGGGCTAAG GGACAGACTC
  S
  ACCTGACCGA ATCCCATCAC AAGGACGCCT TTCTAAACTC CACTGGGCCG CAGCTCTGGT
  CACGAGGCTC GGCCTCACTC CACCACCCCC CCAACCCCCG CCCCATCCCT TGTCAGAGCT
  CCCGTGCATG CGCAGTCGCG CCGGAAGCAC GGCTCTGGAG TTTCCGCATC ACGGACCTCA
  GGGATCCTCT ACGCTGTTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46778180	NES10734335	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33150754					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778180	NES10734335	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95858472 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	within coordinates
Gm56819	predicted gene, 56819	within coordinates
Gm65572	predicted gene, 65572	168 bp upstream
Rr375411	regulatory region 375411	within coordinates
Rr581095	regulatory region 581095	within coordinates
Rr581096	regulatory region 581096	121 bp proximal
Rr581097	regulatory region 581097	179 bp proximal
Rr581098	regulatory region 581098	1938 bp proximal
Tssr30663	transcription start site region 30663	74 bp downstream
Tssr30664	transcription start site region 30664	147 bp upstream
Tssr34570	transcription start site region 34570	124 bp upstream