rs33149608 SNP Detail

Summary

• ID
  rs33149608
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95858210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGTAATA AAGCTGTATA
  TATCGGAATA TGGGGTTCCC GGGCTGCAGT TCGCAGGAGG TGCTGCGCTA GACGCCAACT
  TTTAAGGAGA CTCTTCTAAG GTCGCGTTTC CCACCGCGAT CCCCGGGTCG AGCCAGCGTG
  CTGCCACGTA TCGGGTCTTG ATAGGCTTGA ACAGGTCATG CCATTTATCT AAATGCTTTT
  S
  GAAGTCAGTC CTCTGCCGCA GTCCCTGGGC ATATCCCGAG CTTCCAATCT TTATTTTCCG
  TTTTCTAATT GCTGCTACTA CAGCAGAGCG CCCTGCTGGG GTCCGCCAAG AACAGGACTT
  AGGACAGAAC TGCAAATCGA GCACTCGTTC CGGAGCTAGC GAAGGCGGAT GTGACGTCAG
  ATCGACTACG TCGGATGCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46778171	NES10734330	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33149608					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778171	NES10734330	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95858210 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	within coordinates
Gm56819	predicted gene, 56819	within coordinates
Gm65572	predicted gene, 65572	430 bp upstream
Rr375411	regulatory region 375411	within coordinates
Rr581095	regulatory region 581095	within coordinates
Rr581096	regulatory region 581096	383 bp proximal
Rr581097	regulatory region 581097	441 bp proximal
Tssr30663	transcription start site region 30663	160 bp upstream
Tssr30664	transcription start site region 30664	409 bp upstream
Tssr34570	transcription start site region 34570	119 bp downstream