rs33149605 SNP Detail

Summary

• ID
  rs33149605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95858133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGAATATGG GGTTCCCGGG CTGCAGTTCG CAGGAGGTGC
  TGCGCTAGAC GCCAACTTTT AAGGAGACTC TTCTAAGGTC GCGTTTCCCA CCGCGATCCC
  Y
  GGGTCGAGCC AGCGTGCTGC CACGTATCGG GTCTTGATAG GCTTGAACAG GTCATGCCAT
  TTATCTAAAT GCTTTTGGAA GTCAGTCCTC TGCCGCAGTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46778168	NES10734329	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33149605					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778168	NES10734329	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95858133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	within coordinates
Gm56819	predicted gene, 56819	within coordinates
Gm65572	predicted gene, 65572	507 bp upstream
Rr375411	regulatory region 375411	within coordinates
Rr581095	regulatory region 581095	within coordinates
Rr581096	regulatory region 581096	460 bp proximal
Rr581097	regulatory region 581097	518 bp proximal
Tssr30663	transcription start site region 30663	237 bp upstream
Tssr30664	transcription start site region 30664	486 bp upstream
Tssr34570	transcription start site region 34570	196 bp downstream