rs33149438 SNP Detail

Summary

• ID
  rs33149438
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95763260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCACAAAC TTCAGCCCCT
  GAGACGGAGC CCGAACGTTA CACCGGAACC GGAAACCTTC CGGTTGCCCT ACGGCCCGCC
  GTCGCTACCG CCACACACCG CCACGCTGCG GTCCCTACGG CACGTGACTA CGGAAGGCGG
  GGCCTCAGCT GCGCAGCCGC GGTATCAAGG TGCCGGCCGC GGGGCGCACG CGCCGCGGGA
  K
  CCTAAAGCCT AGTCCGCGGG TTGTCCCGGA GCGATGCCAA CGTTAGTTCG GGCATTATTT
  CCCGGAGCAG AAATCGGTTG GCATCACATT CCCTCGGGTC CAAAGAGTTA GTGCGCTAAG
  ATTATCACTT AGAACTAAAA GCAAGGACGT CCACATTCGT ACTCAAAGTG TCCTTTCTAG
  TTTAAAAAAA AAAAAATTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46777601	NES10739097	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33149438					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777601	NES10739097	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95763260 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13522	CpG island 13522	within coordinates
Gm26594	predicted gene, 26594	within coordinates
Prpf3	pre-mRNA processing factor 3	63 bp upstream
Rr397843	regulatory region 397843	within coordinates
Rr581050	regulatory region 581050	206 bp distal
Rr581051	regulatory region 581051	within coordinates
Rr581052	regulatory region 581052	29 bp proximal
Tssr34550	transcription start site region 34550	126 bp upstream
Tssr34551	transcription start site region 34551	59 bp upstream