rs33148713 SNP Detail

Summary

• ID
  rs33148713
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95858070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC GGGCTGCAGT TCGCAGGAGG
  W
  GCTGCGCTAG ACGCCAACTT TTAAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46778165	NES10734327	PERLEGEN	MM_PANEL2	f	SNP	A		A	T	A	T	A	T	A		A	A	A		A
ss135513182	ENSMUSSNP807553	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320841247	CHEV_3_95754681	CHEVERUD	SCREENING_POP	f	SNP										T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33148713					SNP	A	A	A	T	A	T	A	T	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778165	NES10734327	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95858070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	within coordinates
Gm56819	predicted gene, 56819	within coordinates
Gm65572	predicted gene, 65572	570 bp upstream
Rr375411	regulatory region 375411	within coordinates
Rr581095	regulatory region 581095	within coordinates
Rr581096	regulatory region 581096	523 bp proximal
Rr581097	regulatory region 581097	581 bp proximal
Tssr30663	transcription start site region 30663	300 bp upstream
Tssr30664	transcription start site region 30664	549 bp upstream
Tssr34570	transcription start site region 34570	259 bp downstream