rs33148711 SNP Detail

Summary

• ID
  rs33148711
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95856577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAGTAT GTATTTCAGT
  TAAGTTCTTG AATATTTCCC TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGCA TCATTTGGAT GCCTCCTTAG AGAAATGTGC ATCCACCATT
  AAATACATAG ACTGTAAGAG GGCCATAATC TCAACCCTAC GCACTGCCTA TGACTGACTT
  Y
  CTGGGCAGGG TCACTCCACA GGGCGGAGTG GGTTCTCCAC CCAGAGAAAA GAGCATACAA
  TCTTTGATAG CGACATATGA TCGGTGTTGG CTTTTACAAA CTTCACACTA GAGAACATGA
  AATCGAGGTT TTGTTTTGTT TTAAGCAAAA ACAACCCTCA ATGTTAATAA GGTTGGGATT
  TTATATTAGG GCACACGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46778162	NES10734443	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33148711					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778162	NES10734443	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95856577 () rs orientation: forward

Symbol	Name	Function Class
Anp32e	acidic nuclear phosphoprotein 32 family member E	1878 bp downstream
Cpgi13530	CpG island 13530	1435 bp proximal
Gm56819	predicted gene, 56819	740 bp downstream
Rr375411	regulatory region 375411	1185 bp upstream
Rr581095	regulatory region 581095	1174 bp proximal
Tssr30663	transcription start site region 30663	1793 bp upstream
Tssr34570	transcription start site region 34570	1752 bp downstream