rs33148562 SNP Detail

Summary

• ID
  rs33148562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95762528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATACTTA AGTTACTATT
  TCTTGTCAAG CAGAATACTT ACTGCATGTA AGGACACACA CAGCAGTGAA CAAAACAGCC
  AAGAATCCTC ATGTTAATGG GACTTACAAC CCACTACAAT TGAATAATAG GCTAGAAAGT
  TTAAGCAATT TTCAAAATCC AGAGTAATAG GTGAAGCATA TTAAGCATAT TGGATGTAAG
  Y
  TCAAGAAATA TACTAACAAA TGGATGTCTT CAAATTCGAC CCGAATGTGC AAACGAAACA
  GTCAATGGAT AAGAAAGTTT CAGTCAGTAG AGTTGTCACT AACCAGATGT TCAACTCTAA
  TAGCGAGGGG GCGTCAGCGT CGGTGGGGGG CTGGGGGGTG GAGGGGAAGG GGAAGGGGAA
  GGGGAGGGAG GCAGAACGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46777595	NES10739087	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33148562					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777595	NES10739087	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95762528 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13522	CpG island 13522			204 bp proximal
Gm26594	predicted gene, 26594			703 bp upstream
Prpf3	pre-mRNA processing factor 3			Intron
				Noncoding-Transcript-Variant
Rr397843	regulatory region 397843			482 bp upstream
Rr581050	regulatory region 581050			44 bp proximal
Rr581051	regulatory region 581051			527 bp proximal
Rr581052	regulatory region 581052			761 bp proximal
Tssr34550	transcription start site region 34550			561 bp downstream
Tssr34551	transcription start site region 34551			644 bp downstream