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rs33148555 SNP Detail
Summary
  • ID
    rs33148555
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:155323068 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAACTGCAGG GAGAAGTTAA
    TAACAAGTTT GGATTGCAGT CTGCTTGCCA GGAGAGGAGG GAGGGAGAGG CATAAAGAGA
    GGACAGAGTG GAGGGGTAGA AAGGAGGGCA GGCAGCAGGG CATAGAGACG GGCTCCACAC
    ATGGCTCAGG CCAGAGAATT CAGGGATGTG GTCTGAGGGT AGCCAAGGGC CCAGGGTCAC
    R
    AGATCATTTT ACCTCGGGAG TAAGAACTGT AAGGCCAAGT AGTGGTTAGA CACACACTGG
    ACATGTGGGT GAACCTACCA AGCCTTAGTT CCCCCTGCAG AAACCACCTT GGATTAAAGT
    CTGGGAAGCT TGTTCTGGGC AAAGACCACG ACACTATTGC CGCTGTCACC ACCATAACTC
    TACTCCTGCA CACACACCAC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
MOLF/EiJ
PWD/PhJ
WSB/EiJ
ss46777588 NES11004187 PERLEGEN MM_PANEL2 f SNP A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
MOLF/EiJ
PWD/PhJ
WSB/EiJ
rs33148555 SNP A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46777588 NES11004187 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:155323068 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm33187 predicted gene, 33187 1654 bp upstream
Gm52713 predicted gene, 52713 1831 bp downstream
Rr606425 regulatory region 606425 1042 bp distal
Rr606426 regulatory region 606426 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory