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rs33147842 SNP Detail
Summary
  • ID
    rs33147842
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:95856205 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTATGTATCT CTAATAAAAA
    TACATTTATT TAGAGACAGG TTCTCGTGAA GCCCTGGCTG GCCTGGAAGT CAGCAGATCA
    CTTGTTTCTG CCTCCAGTGT GCTTCAATAA GGCTGCAGTG CCCAGCCCTG GTAAAATACG
    TTACAAAGAC TTACTGACTG ACTTTTAACT TAAGAGTATG TGTGAGCCTT CAGATCCCTT
    R
    GAACAAAGAT TTTTTGGCTG TGTAAGCTGG TAACTCACCT GAGCCTCTGT AAGAGCAGCA
    AGTGCTCCTA ACTGCAGAGC CACCTTCAGC TCAAGTTCAA GTTGTTCAAG TCTTAGGGCT
    TCTTAACCTG CTAAGACCCT ATAGTAGGGT AACCGTGACT AAGAAAGACG AAGGAAAGTA
    TGTATTTCAG TTAAGTTCTT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
ss46778153 NES10734476 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G G G G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
rs33147842 SNP G G G G G G A G G G G G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46778153 NES10734476 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:95856205 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Anp32e acidic nuclear phosphoprotein 32 family member E 1506 bp downstream
Cpgi13530 CpG island 13530 1807 bp proximal
Gm56819 predicted gene, 56819 1112 bp downstream
Rr375411 regulatory region 375411 1557 bp upstream
Rr581095 regulatory region 581095 1546 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory