rs33147842 SNP Detail

Summary

• ID
  rs33147842
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95856205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGTATCT CTAATAAAAA
  TACATTTATT TAGAGACAGG TTCTCGTGAA GCCCTGGCTG GCCTGGAAGT CAGCAGATCA
  CTTGTTTCTG CCTCCAGTGT GCTTCAATAA GGCTGCAGTG CCCAGCCCTG GTAAAATACG
  TTACAAAGAC TTACTGACTG ACTTTTAACT TAAGAGTATG TGTGAGCCTT CAGATCCCTT
  R
  GAACAAAGAT TTTTTGGCTG TGTAAGCTGG TAACTCACCT GAGCCTCTGT AAGAGCAGCA
  AGTGCTCCTA ACTGCAGAGC CACCTTCAGC TCAAGTTCAA GTTGTTCAAG TCTTAGGGCT
  TCTTAACCTG CTAAGACCCT ATAGTAGGGT AACCGTGACT AAGAAAGACG AAGGAAAGTA
  TGTATTTCAG TTAAGTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46778153	NES10734476	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33147842					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778153	NES10734476	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95856205 () rs orientation: forward

Symbol	Name	Function Class
Anp32e	acidic nuclear phosphoprotein 32 family member E	1506 bp downstream
Cpgi13530	CpG island 13530	1807 bp proximal
Gm56819	predicted gene, 56819	1112 bp downstream
Rr375411	regulatory region 375411	1557 bp upstream
Rr581095	regulatory region 581095	1546 bp proximal