rs33147553 SNP Detail

Summary

• ID
  rs33147553
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95762282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTTCTCA GTGACAACTT
  TTATGAATAA TCCTGGGATA GCTTTTTTGG GCCATCATGA GATAGCAGTA TACTGCCTAT
  CAAAAAGAAA GCAACCACAG GCACTAAAAG TGGAGAAGAA AGCCCATTTA AGATAGAATA
  TAGTAAGCAC CACCATTCAT AAGCCCTTAG GAAAGCAAGT TAATTCCCGA GAGCCTCAGT
  R
  TACTTATCTT AGAAAATGAG ACATCTGGTA TAACACTCCA TTCAATAAAT ACTTAAGTTA
  CTATTTCTTG TCAAGCAGAA TACTTACTGC ATGTAAGGAC ACACACAGCA GTGAACAAAA
  CAGCCAAGAA TCCTCATGTT AATGGGACTT ACAACCCACT ACAATTGAAT AATAGGCTAG
  AAAGTTTAAG CAATTTTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46777586	NES10739141	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33147553					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777586	NES10739141	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95762282 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13522	CpG island 13522			450 bp proximal
Gm26594	predicted gene, 26594			949 bp upstream
Prpf3	pre-mRNA processing factor 3			Intron
				Noncoding-Transcript-Variant
Rr397843	regulatory region 397843			728 bp upstream
Rr581050	regulatory region 581050			290 bp proximal
Rr581051	regulatory region 581051			773 bp proximal
Rr581052	regulatory region 581052			1007 bp proximal
Tssr34550	transcription start site region 34550			807 bp downstream
Tssr34551	transcription start site region 34551			890 bp downstream