rs33147552 SNP Detail

Summary

• ID
  rs33147552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155322829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGAGGGCG GGGGTTCATC
  AAGCAGGCCC CTTAGCAACT CAAAGAGGAG GACAGGGGCT GAAGGATCTG GGGTGTACCC
  CCTTGCCTCA CGACCAACAG TTCTGGGGTC TTCCAAGGCT TCAGGACTGG CATCTGCCTC
  CACCCAGCAC CTCTCAGAGA CTAGTCCACG TCCAGGCTTA GCGCTGCTCG GCAGGCTCCC
  R
  TCTCCATGAG TAATATTTAA CTTGGAAGGG CCCTGGGACA ACTGCAGGGA GAAGTTAATA
  ACAAGTTTGG ATTGCAGTCT GCTTGCCAGG AGAGGAGGGA GGGAGAGGCA TAAAGAGAGG
  ACAGAGTGGA GGGGTAGAAA GGAGGGCAGG CAGCAGGGCA TAGAGACGGG CTCCACACAT
  GGCTCAGGCC AGAGAATTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46777585	NES11004186	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33147552					SNP	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777585	NES11004186	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155322829 () rs orientation: forward

Symbol	Name	Function Class
Gm33187	predicted gene, 33187	1893 bp upstream
Gm52713	predicted gene, 52713	1592 bp downstream
Rr606425	regulatory region 606425	803 bp distal
Rr606426	regulatory region 606426	within coordinates