rs33146871 SNP Detail

Summary

• ID
  rs33146871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95761358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACGGTCTTA CAATGTAGCT
  CATACAGAAC TCAACACTTG GCAACTCTCC TGTCTCCACT TGCCCAGTGA GAAATTCTAG
  GAGCATACAA CCATGCCCCA CTCATTTGAT ATTTTAATTC TAACTCAGCA TCAGTCATCA
  TTGCTATCTA AAGAATGAAC AAACTAGGAA TAACGTAATC TGAGGAATGG GTTCTAACTC
  Y
  GACCCTGTCA CACAAAAGAC TGGCAAACAG AACATCTGAA GAGTCAATCT AGAAGTCAAC
  TTCTGCTCTG GAAGCCATTC TCTAACCTAA CTTTGACCTA AAACTTGTCT AACGGATTCA
  AAGAAGAGGG TTTATTCAAG TCAGTCCTCC TGTGTTAAAT CTCATAATCC TTAAGAATGC
  TGTCACCTTT CTCTGTAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46777574	NES10739177	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33146871					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777574	NES10739177	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95761358 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13522	CpG island 13522			1374 bp proximal
Gm26594	predicted gene, 26594			1873 bp upstream
Prpf3	pre-mRNA processing factor 3			Intron
				Noncoding-Transcript-Variant
Rr397843	regulatory region 397843			1652 bp upstream
Rr581050	regulatory region 581050			1214 bp proximal
Rr581051	regulatory region 581051			1697 bp proximal
Rr581052	regulatory region 581052			1931 bp proximal
Tssr34550	transcription start site region 34550			1731 bp downstream
Tssr34551	transcription start site region 34551			1814 bp downstream