rs33146867 SNP Detail

Summary

• ID
  rs33146867
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155321930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGGCCA GAGACTCGTG
  GGGAGCAGTG AGCAGAGAAA GGGGCTTCCC ATTGCGGGTG TCGGGTTCAC AGATGAACGC
  TTCCAGGATG AAATACAGGG TCACGCTTCA TCAACCCTGT GGGTAACCTG TCAGTTTGGG
  GCTTTTATGC GAGGCCTCCT GGGTCGTAAT GTCCTGTCCA GTTCTTCTCT TCTACCCTAG
  R
  TGTACTGAGC CTGTTCCACC TGAGTCTTGC AGGGATATCG ATCCTTTGGG TAGACCCCAG
  ACCAGATCAG AATGTGGAGT TAGAAGGATT GGGGTGTTGA GTCTGGAGTG GAAGGTTCAT
  TCCTAAGTTC ATCTGGCCCA TGCTCCAAAA TGGGTGAAGG GTGGGCATTC CAGGTAGGCA
  CAATAGCAGA CAAAAAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46777570	NES11004173	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33146867					SNP	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777570	NES11004173	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155321930 () rs orientation: forward

Symbol	Name	Function Class
Gm52713	predicted gene, 52713	693 bp downstream
Rr1208	regulatory region 1208	1306 bp downstream
Rr606422	regulatory region 606422	1946 bp distal
Rr606423	regulatory region 606423	1737 bp distal
Rr606424	regulatory region 606424	1236 bp distal
Rr606425	regulatory region 606425	within coordinates
Rr606426	regulatory region 606426	520 bp proximal
Tssr40625	transcription start site region 40625	1951 bp downstream