rs33146864 SNP Detail

Summary

• ID
  rs33146864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155321708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCTGGC GCTTGGGAGC
  CCTGTCCTAA GGCTGTATCC AAGGTGAAGT GCCAGGGAAG AGGCCTCTTG AGACAGGCTT
  AGAGAGCCAG TGAGGGTCTG GGTAGCTGAG CCAGGTGGTT CGACTCTCAG GAGTAGAAGT
  GGCTAATGTG AAGAAGGAAC TTCACATTTG TGGTTTGTCT GAGAGAGTGC CCACTCCAGC
  Y
  TCTCTCTAGA CATCAGACAG GAAGGAGGCC AGAGACTCGT GGGGAGCAGT GAGCAGAGAA
  AGGGGCTTCC CATTGCGGGT GTCGGGTTCA CAGATGAACG CTTCCAGGAT GAAATACAGG
  GTCACGCTTC ATCAACCCTG TGGGTAACCT GTCAGTTTGG GGCTTTTATG CGAGGCCTCC
  TGGGTCGTAA TGTCCTGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46777567	NES11004171	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33146864					SNP	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777567	NES11004171	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155321708 () rs orientation: forward

Symbol	Name	Function Class
Gm52713	predicted gene, 52713	471 bp downstream
Rr1208	regulatory region 1208	1084 bp downstream
Rr606422	regulatory region 606422	1724 bp distal
Rr606423	regulatory region 606423	1515 bp distal
Rr606424	regulatory region 606424	1014 bp distal
Rr606425	regulatory region 606425	within coordinates
Rr606426	regulatory region 606426	742 bp proximal
Tssr40625	transcription start site region 40625	1729 bp downstream