rs33146460 SNP Detail

Summary

• ID
  rs33146460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95766789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTATTGG GTTCTGTCAT
  GCTACAGGGA AAGTGGGCTT TAGATTGTAC TTTTCAAATG ATTAAACCTA GCTTTTAGGG
  CGTGGTGCCC CATGTCTTTA GTAAGGACTG GGATCCACTA CTCAGCAGGC TGAGGTAGGA
  ATGTTACGTG AGTCCCAGAG TCTAGGCCAA TCTAAGTAGT ACAGCAAAAA TCTCTCTCTT
  R
  AAGCCAGTCA ATTAACTTTC CAATTACAAA AAAACAAGTA AAACCCTCAT GCTATTGGGA
  AATTCTAATT TCCATCTTAC TAGAAAACAA CTGCCCTTTC TAATGAGTCT CACACCAAGG
  TATCTTCTAA TTCTAGTTTC TGCTGGGGCT GGTGAGATGG CTCAGTGGGT AAAGATGCTT
  GCCACCAAGT CTAGCAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46777640	NES10738788	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33146460					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46777640	NES10738788	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95766789 () rs orientation: forward

Symbol	Name	Function Class
Gm26594	predicted gene, 26594	within coordinates
Rr581053	regulatory region 581053	853 bp distal
Rr581054	regulatory region 581054	934 bp proximal
Rr581055	regulatory region 581055	1025 bp proximal
Rr581056	regulatory region 581056	1940 bp proximal